Basic Information
Locus ID:
Chr28G000390
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 539039 | 540746 | + | Chr28G000390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 155 | 175 | 0.13 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 202 | 224 | 0.035 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 418 | 552 | 1.8E-26 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 76 | 1.7E-10 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 395 | 551 | 2.56E-43 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 315 | 6.04E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 491 | 556 | 6.9E-16 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 375 | 490 | 2.2E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 96 | 349 | 8.3E-63 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 95 | 1.1E-10 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 130 | 153 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 248 | 272 | 50.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 415 | 556 | 6.0E-6 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 200 | 224 | 5.4 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 202 | 224 | 7.095899 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 415 | 558 | 27.170507 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 421 | 449 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 535 | 547 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 200 | 213 | 2.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 155 | 168 | 2.5E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69270.1 | receptor-like protein kinase 1. RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. | 0 |
| RefSeq | XP_025804266.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Panicum hallii] | 0 |
| Q9ZRF9 | Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana OX=3702 GN=RPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9EP06 | Protein kinase domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology