Basic Information
Locus ID:
Chr28G000340
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000028 | 489597 | 490963 | - | Chr28G000340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 88 | 128 | 2.2E-13 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 89 | 146 | 4.74E-15 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 16 | 96 | 2.06E-22 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 88 | 4.0E-39 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 89 | 149 | 1.1E-17 | - |
| SMART | SM01376 | eIF_5a_2 | 88 | 144 | 2.7E-19 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 18 | 143 | 3.7E-35 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 150 | 3.6E-52 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 53 | 60 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_021308281.1 | eukaryotic translation initiation factor 5A-like [Sorghum bicolor] | 0 |
| P56333 | Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum OX=4113 GN=EIF5A1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VX86 | Eukaryotic translation initiation factor 5A OS=Eragrostis curvula OX=38414 GN=EJB05_13688 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology