Basic Information
Locus ID:
Chr27G016880
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 37849272 | 37853729 | - | Chr27G016880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 354 | 621 | 1.12206E-88 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 39 | 132 | 2.8E-7 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 349 | 621 | 8.6E-43 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 161 | 249 | 1.9E-8 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 331 | 623 | 9.11E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 33 | 136 | 5.3E-6 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 148 | 251 | 1.6E-16 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 313 | 424 | 3.7E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 425 | 627 | 6.7E-53 | - |
| SMART | SM00220 | serkin_6 | 348 | 621 | 1.7E-34 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 31 | 136 | 10.306266 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 348 | 639 | 36.626152 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 142 | 252 | 15.800891 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 354 | 376 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 470 | 482 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05200.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 25. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_034582264.1 | cysteine-rich receptor-like protein kinase 19 [Setaria viridis] | 0 |
| Q0D5R3 | Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368Q8T3 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G424500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.4000, BH03.4328, BH03.4330, CH07.183 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0580800, gene-QOZ80_7BG0611960 |
| Poaceae | Oryza coarctata | 1 | Oco13G015250 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g47230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G383200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G000630, Chr27G016880 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-150 |