Basic Information
Locus ID:
Chr27G016520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RhoGAP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 37637247 | 37648806 | + | Chr27G016520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 181 | 320 | 1.80371E-33 | - |
| CDD | cd00821 | PH | 21 | 120 | 2.30867E-12 | - |
| Pfam | PF00169 | PH domain | 20 | 124 | 7.8E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 599 | 686 | 1.1E-19 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 1.8E-30 | IPR000198 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 374 | 4.91E-33 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 15 | 132 | 1.23E-17 | - |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 151 | 374 | 3.4E-41 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 8 | 127 | 7.5E-18 | IPR011993 |
| SMART | SM00233 | PH_update | 19 | 127 | 1.1E-15 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 178 | 369 | 1.6E-25 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 372 | 29.599771 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.6623 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 557 | - | - |
| Coils | Coil | Coil | 662 | 689 | - | - |
| Coils | Coil | Coil | 809 | 829 | - | - |
| Coils | Coil | Coil | 589 | 623 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_004958566.1 | rho GTPase-activating protein 7 isoform X4 [Setaria italica] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | K3ZQL8 | Rho GTPase-activating protein 7-like OS=Setaria italica OX=4555 GN=101765349 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology