Basic Information
Locus ID:
Chr27G014980
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 36430591 | 36435398 | + | Chr27G014980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 63 | 133 | 6.23254E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 147 | 221 | 2.74047E-48 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 218 | 3.3E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 268 | 334 | 4.5E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 63 | 129 | 3.0E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 344 | 8.69E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 140 | 232 | 3.9E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 52 | 139 | 7.39E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 49 | 140 | 1.1E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 244 | 344 | 5.8E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 141 | 240 | 1.5E-26 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 147 | 220 | 4.8E-5 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 267 | 336 | 2.6 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 267 | 336 | 2.9E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 147 | 220 | 7.7E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 62 | 131 | 6.5E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 266 | 340 | 14.794592 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 224 | 17.676954 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 61 | 135 | 14.896925 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 248 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_040382159.1 | oligouridylate-binding protein 1-like isoform X2 [Oryza brachyantha] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VR85 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_11279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology