Basic Information
Locus ID:
Chr27G014570
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Nuclear transport factor 2 (NTF2) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 36005154 | 36009247 | - | Chr27G014570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 13 | 136 | 2.46238E-41 | IPR018222 |
| CDD | cd00590 | RRM_SF | 349 | 407 | 3.66572E-11 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 349 | 406 | 7.3E-10 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 17 | 134 | 2.5E-29 | IPR002075 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 322 | 407 | 1.88E-13 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 13 | 135 | 4.19E-35 | IPR032710 |
| Gene3D | G3DSA:3.10.450.50 | - | 5 | 139 | 1.2E-36 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 324 | 434 | 3.1E-14 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 348 | 420 | 1.5E-5 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 17 | 134 | 31.951178 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 347 | 424 | 10.036136 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 238 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_034583727.1 | nuclear transport factor 2-like isoform X2 [Setaria viridis] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VRA2 | NTF2 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_11416 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology