Basic Information
Locus ID:
Chr27G013210
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 34786389 | 34790235 | - | Chr27G013210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15898 | EFh_PI-PLC | 365 | 497 | 7.19546E-17 | - |
| CDD | cd05117 | STKc_CAMK | 58 | 316 | 1.62259E-138 | - |
| Pfam | PF13499 | EF-hand domain pair | 435 | 498 | 2.6E-14 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 59 | 317 | 2.2E-76 | IPR000719 |
| Pfam | PF13833 | EF-hand domain pair | 377 | 427 | 2.0E-7 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 345 | 518 | 4.88E-42 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 340 | 8.63E-88 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 61 | 144 | 1.7E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 145 | 325 | 1.4E-58 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 326 | 500 | 1.4E-50 | - |
| SMART | SM00054 | efh_1 | 436 | 464 | 0.67 | IPR002048 |
| SMART | SM00054 | efh_1 | 472 | 500 | 1.2E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 59 | 317 | 8.1E-100 | IPR000719 |
| SMART | SM00054 | efh_1 | 364 | 392 | 0.0012 | IPR002048 |
| SMART | SM00054 | efh_1 | 400 | 428 | 1.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 360 | 395 | 13.983393 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 59 | 317 | 49.134743 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 432 | 467 | 11.835447 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 396 | 431 | 9.93856 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 468 | 503 | 14.569197 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 445 | 457 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 373 | 385 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 65 | 88 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 179 | 191 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 481 | 493 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 409 | 421 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_025802338.1 | calcium-dependent protein kinase 20 [Panicum hallii] | 0 |
| Q84SL0 | Calcium-dependent protein kinase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811N0Z3 | Calcium-dependent protein kinase 30 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS11537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology