Basic Information
Locus ID:
Chr27G012280
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 33902375 | 33903630 | + | Chr27G012280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 35 | 298 | 3.7E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 23 | 303 | 4.51E-59 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 27 | 316 | 8.7E-56 | - |
| SMART | SM00220 | serkin_6 | 32 | 298 | 2.5E-54 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 32 | 298 | 36.668556 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 38 | 61 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51660.1 | mitogen-activated protein kinase kinase 4. Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission. | 0 |
| RefSeq | XP_004959387.3 | mitogen-activated protein kinase kinase 9 [Setaria italica] | 0 |
| O80397 | Mitogen-activated protein kinase kinase 4 OS=Arabidopsis thaliana OX=3702 GN=MKK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TCE8 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH02.2284, AH03.1639, AH05.2134, BH02.2385, BH05.2266 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0023950, gene-QOZ80_1AG0023970 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0086640.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021320, gene-QYE76_053724 |
| Poaceae | Oryza coarctata | 3 | Oco01G014270, Oco02G014510, Oco23G006700 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g42400.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G126000, gene-BS78_01G131600 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603293 |
| Poaceae | Sporobolus alterniflorus | 13 | Chr02G015780, Chr03G010710, Chr05G018050, Chr10G011800 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G641700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG066320 |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G391100.1.cds1, TraesCS1B02G419300.1.cds1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb145170_P001, Zm00001eb145180_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-19858, nbis-gene-29290, nbis-gene-31045 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10106, Zma_g30189, Zma_g32539, Zma_g8188 |