Basic Information
Locus ID:
Chr27G012000
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 33559073 | 33574663 | + | Chr27G012000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 164 | 258 | 2.0E-8 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 394 | 439 | 4.8E-7 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 36 | 131 | 3.1E-11 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 351 | 446 | 7.83E-16 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 151 | 261 | 5.1E-18 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 353 | 451 | 3.1E-16 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 30 | 134 | 1.9E-11 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 32 | 134 | 11.989957 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 151 | 261 | 16.805674 | IPR002902 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 476 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_008653174.1 | cysteine-rich receptor-like protein kinase 10 [Zea mays] | 0 |
| Q0D5R2 | Cysteine-rich receptor-like protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6DV25 | Cysteine-rich receptor-like protein kinase 10 OS=Zea mays OX=4577 GN=CRK10_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3243, BH03.3430, CH03.3635, CH03.3636 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_7AG0570270, gene-QOZ80_7AG0570320 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0139040.1, HORVU.MOREX.r3.7HG0638110.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040820, gene-QYE76_040848 |
| Poaceae | Oryza coarctata | 2 | Oco13G009240, Oco14G009630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g35140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G301000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304253 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005260, Chr27G012000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G1046700, Tel2E01G404800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG028890, gene_TRIDC2BG032550 |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G217200.1, TraesCS2A02G562800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb323230_P001, Zm00001eb323240_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6572 |