Basic Information
Locus ID:
Chr27G009880
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 30941379 | 30942023 | + | Chr27G009880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 17 | 61 | 1.97516E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 18 | 64 | 6.2E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 72 | 5.95E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 79 | 6.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 19 | 59 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 19 | 60 | 13.492482 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 34 | 43 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 105 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004963315.1 | E3 ubiquitin-protein ligase RNF5 isoform X2 [Setaria italica] | 0 |
| Q99942 | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DQK8 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_028979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology