Basic Information
Locus ID:
Chr27G009580
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 30577908 | 30582201 | - | Chr27G009580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 239 | 280 | 1.37667E-10 | - |
| Pfam | PF13696 | Zinc knuckle | 152 | 171 | 9.5E-9 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 4 | 82 | 2.9E-15 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 232 | 305 | 5.3E-11 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 151 | 198 | 2.72E-6 | IPR036875 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 232 | 310 | 3.6E-11 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 176 | 231 | 3.3E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 3.4E-16 | - |
| SMART | SM00343 | c2hcfinal6 | 155 | 171 | 0.12 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 1.1E-31 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 181 | 197 | 0.044 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 182 | 197 | 9.388994 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 14.547437 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 429 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 0 |
| RefSeq | XP_025805389.1 | E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like isoform X1 [Panicum hallii] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WM05 | DWNN domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_00191 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology