Basic Information
Locus ID:
Chr27G009120
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Calcium-binding EGF-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 30148662 | 30151209 | + | Chr27G009120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 305 | 343 | 6.84558E-6 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 32 | 96 | 2.8E-11 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 433 | 700 | 4.4E-47 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 415 | 705 | 2.0E-74 | IPR011009 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 301 | 354 | 1.28E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 407 | 508 | 2.8E-30 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 262 | 308 | 1.3E-5 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 309 | 353 | 8.7E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 509 | 722 | 6.5E-49 | - |
| SMART | SM00181 | egf_5 | 308 | 354 | 0.063 | IPR000742 |
| SMART | SM00179 | egfca_6 | 305 | 354 | 2.5E-8 | IPR001881 |
| SMART | SM00220 | serkin_6 | 433 | 706 | 5.3E-39 | IPR000719 |
| SMART | SM00181 | egf_5 | 255 | 304 | 38.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 433 | 713 | 36.626152 | IPR000719 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 305 | 338 | - | IPR018097 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 439 | 462 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 554 | 566 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21210.1 | wall associated kinase 4. cell wall-associated ser/thr kinase involved in cell elongation and lateral root development | 0 |
| RefSeq | XP_004963217.1 | wall-associated receptor kinase 2 [Setaria italica] | 0 |
| Q9LMN6 | Wall-associated receptor kinase 4 OS=Arabidopsis thaliana OX=3702 GN=WAK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6VLD8 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G409900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology