Basic Information
Locus ID:
Chr27G007160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 28039514 | 28041547 | + | Chr27G007160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 451 | 482 | 2.2E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 353 | 434 | 3.1E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 353 | 435 | 8.5E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 130 | - | - |
| Coils | Coil | Coil | 387 | 414 | - | - |
| Coils | Coil | Coil | 352 | 379 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | NP_001183870.1 | uncharacterized protein LOC100502463 [Zea mays] | 0 |
| TrEMBL | A0A5J9WM34 | PAPA-1 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_01086 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology