Basic Information
Locus ID:
Chr27G007130
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 28008707 | 28016490 | - | Chr27G007130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 476 | 722 | 2.95349E-132 | - |
| CDD | cd00130 | PAS | 107 | 208 | 8.76192E-15 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 471 | 722 | 5.2E-69 | IPR001245 |
| Pfam | PF00989 | PAS fold | 99 | 206 | 2.4E-16 | IPR013767 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 441 | 722 | 1.48E-84 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 103 | 205 | 6.6E-20 | IPR035965 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 548 | 742 | 1.6E-62 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 108 | 213 | 1.2E-24 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 463 | 547 | 3.1E-31 | - |
| SMART | SM00091 | pas_2 | 98 | 165 | 3.9E-12 | IPR000014 |
| SMART | SM00220 | serkin_6 | 470 | 730 | 8.5E-61 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 97 | 206 | 2.6E-14 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 470 | 731 | 44.413986 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 96 | 167 | 19.985958 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 589 | 601 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 649 | 671 | 3.6E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 693 | 715 | 3.6E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 544 | 557 | 3.6E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 583 | 601 | 3.6E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 630 | 640 | 3.6E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 292 | - | - |
| Coils | Coil | Coil | 715 | 735 | - | - |
| Coils | Coil | Coil | 5 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67890.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_004962762.1 | probable serine/threonine-protein kinase SIS8 isoform X2 [Setaria italica] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RB94 | PAS domain-containing protein tyrosine kinase family protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50781 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology