Basic Information
Locus ID:
Chr27G006730
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 27358384 | 27362577 | + | Chr27G006730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 2.8E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 212 | 269 | 2.2E-25 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 34 | 110 | 2.2E-19 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 101 | 158 | 2.09E-20 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 31 | 99 | 8.24E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 214 | 4.08E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 233 | 2.0E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 236 | 276 | 1.8E-17 | - |
| SMART | SM00184 | ring_2 | 165 | 207 | 5.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 208 | 11.869652 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 27 | 98 | 25.453079 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 100 | 164 | 34.652538 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_039839630.1 | E3 ubiquitin-protein ligase MIEL1-like [Panicum virgatum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WMN8 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_01309 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology