halophFGD

Basic Information

Locus ID: Chr27G005960

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Speckle-type POZ protein-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000027	26338011	26345579	-	Chr27G005960

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00651	BTB/POZ domain	289	397	2.7E-21	IPR000210
SUPERFAMILY	SSF54695	POZ domain	278	397	2.94E-26	IPR011333
SUPERFAMILY	SSF49599	TRAF domain-like	133	272	6.7E-9	-
Gene3D	G3DSA:2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	136	268	6.3E-7	IPR008974
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	269	431	1.5E-43	IPR011333
SMART	SM00225	BTB_4	298	401	9.5E-19	IPR000210
ProSiteProfiles	PS50097	BTB domain profile.	298	359	16.300461	IPR000210

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06190.5	-
RefSeq	XP_047050815.1	BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum]
Swiss-Prot	Q9M8J9	BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1
TrEMBL	A0A5J9WPS2	BTB domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_01519 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Sporobolus alterniflorus	2	Chr06G029010, Chr27G005960