Basic Information
Locus ID:
Chr27G005610
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000027 | 25756441 | 25779296 | + | Chr27G005610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 313 | 641 | 2.45286E-168 | - |
| CDD | cd00121 | MATH | 172 | 295 | 4.04476E-37 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1002 | 1211 | 1.6E-54 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 315 | 636 | 1.0E-45 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 740 | 992 | 4.9E-76 | IPR024729 |
| Pfam | PF00917 | MATH domain | 177 | 297 | 1.4E-19 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 168 | 303 | 3.11E-38 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 310 | 666 | 2.75E-96 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 168 | 311 | 1.7E-50 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 312 | 640 | 8.8E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 918 | 1015 | 3.3E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 917 | 7.6E-44 | - |
| SMART | SM00061 | math_3 | 172 | 276 | 1.2E-17 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 170 | 295 | 36.576439 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 315 | 639 | 40.646873 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 555 | 572 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 316 | 331 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_002442151.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Sorghum bicolor] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | C5YNS5 | ubiquitinyl hydrolase 1 OS=Sorghum bicolor OX=4558 GN=SORBI_3008G098900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology