Basic Information
Locus ID:
Chr26G016420
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 36731360 | 36733859 | + | Chr26G016420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 221 | 478 | 7.6E-94 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 33 | 120 | 5.5E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 18 | 136 | 2.83E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 25 | 145 | 4.4E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 32 | 140 | 3.0E-6 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 221 | 502 | 92.584785 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 32 | 104 | 10.840413 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 638 | - | - |
| Coils | Coil | Coil | 560 | 580 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_025825444.1 | BTB/POZ domain-containing protein At5g03250-like [Panicum hallii] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TZF6 | NPH3 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_39811 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology