Basic Information
Locus ID:
Chr26G014230
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter C family member 9
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 34673589 | 34686344 | + | Chr26G014230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 737 | 1031 | 9.0658E-97 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1054 | 1274 | 6.78553E-124 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 422 | 622 | 7.91352E-103 | - |
| Pfam | PF00005 | ABC transporter | 1073 | 1221 | 4.5E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 440 | 574 | 3.3E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 772 | 983 | 2.2E-33 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 228 | 319 | 5.4E-7 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 228 | 404 | 4.19E-11 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 738 | 1038 | 3.27E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 417 | 639 | 1.13E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1048 | 1283 | 3.88E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1039 | 1292 | 1.0E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 432 | 673 | 8.2E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 701 | 1037 | 1.9E-59 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 224 | 405 | 7.6E-25 | IPR036640 |
| SMART | SM00382 | AAA_5 | 449 | 643 | 1.7E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1082 | 1275 | 2.2E-9 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 422 | 645 | 21.615425 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 739 | 1019 | 36.773079 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1058 | 1290 | 17.253702 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 228 | 388 | 14.701625 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 547 | 561 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 714 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021319479.1 | putative ABC transporter C family member 15 [Sorghum bicolor] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811R0L5 | ABC transporter C family member 15 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS45867 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology