Basic Information
Locus ID:
Chr26G014220
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 34661715 | 34663267 | + | Chr26G014220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 55 | 186 | 5.00207E-20 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 60 | 110 | 1.8E-7 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 19 | 338 | 1.2E-87 | IPR007012 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 18 | 184 | 3.15E-34 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 187 | 337 | 2.28E-50 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 344 | 461 | 8.63E-23 | IPR011068 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 180 | 1.8E-114 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 338 | 452 | 3.5E-16 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 19 | 337 | 1.8E-114 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 66 | 495 | 5.4E-136 | IPR014492 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 4 | 69 | 3.6E-7 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 497 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25850.9 | - | 0 |
| RefSeq | XP_002447008.1 | nuclear poly(A) polymerase 4 [Sorghum bicolor] | 0 |
| O82312 | Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=PAPS2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TXS4 | polynucleotide adenylyltransferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_39533 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology