Basic Information
Locus ID:
Chr26G008880
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 28307885 | 28311990 | + | Chr26G008880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 335 | 1.71455E-167 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 352 | 652 | 7.32955E-175 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 357 | 648 | 3.5E-41 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 351 | 652 | 4.45E-50 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 333 | 1.1E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 35 | 334 | 3.6E-31 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 350 | 653 | 1.3E-50 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 336 | 32.607948 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 352 | 653 | 41.223377 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | NP_001168748.1 | Glycerophosphodiester phosphodiesterase GDPDL3 precursor [Zea mays] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5J9TW82 | glycerophosphodiester phosphodiesterase OS=Eragrostis curvula OX=38414 GN=EJB05_39160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology