Basic Information
Locus ID:
Chr26G008510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 27973862 | 27974826 | - | Chr26G008510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.70.330 | - | 50 | 104 | 2.0E-7 | IPR012677 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 120 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16260.1 | RNA binding (RRM/RBD/RNP motifs) family protein. Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. | 0 |
| RefSeq | XP_008676812.1 | uncharacterized protein LOC100273316 isoform X2 [Zea mays] | 0 |
| TrEMBL | A0A5J9UU84 | Uncharacterized protein OS=Eragrostis curvula OX=38414 GN=EJB05_29674 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13119, jg32704 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg20102, Sbi_jg24762, Sbi_jg30858, Sbi_jg44747 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000001426, gene:ENSEOMG00000001999 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30018980, pistato.v30187750 |
| Apiaceae | Apium graveolens | 1 | Ag4G01043 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G009990, scaffold000429G000160 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103721177, gene-LOC120105606, gene-LOC120109483 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_01.538.V1.1, AsparagusV1_03.1919.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G47580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011729m.g.v1.0, Thhalv10012004m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g34620.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB04g030440.2N, BniB07g008840.2N, BniB07g008950.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1234 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1341 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029399, Pov_00031471 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G35834 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.27, BH01.605, CH01.587 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0214540, gene-QOZ80_3BG0259760 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0429830.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061613 |
| Poaceae | Oryza coarctata | 3 | Oco01G010650, Oco05G024590, Oco06G025530 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g55840.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G068200, gene-BS78_06G128500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305355, Pt_Ctg00194 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G004210, Chr01G024700, Chr04G029450, Chr12G036490 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G638000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG058640, gene_TRIDC5BG062800 |
| Poaceae | Triticum aestivum | 3 | TraesCS2D02G002900.1.cds1, TraesCS5A02G403500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb213980_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-16304, nbis-gene-22668, nbis-gene-5666 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2697 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06660 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12099 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.259 |
| Salicaceae | Populus euphratica | 3 | populus_peu10497, populus_peu26565, populus_peu31937 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1380, TC01G1879 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01320.v3.1 |