Basic Information
Locus ID:
Chr26G004500
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 21492382 | 21495951 | - | Chr26G004500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 342 | 394 | 1.1E-5 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 529 | 565 | 3.2E-4 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 432 | 598 | 2.61E-9 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 348 | 394 | 8.12E-8 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 421 | 634 | 1.2E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 338 | 398 | 4.7E-7 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 667 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025825257.1 | U-box domain-containing protein 9-like [Panicum hallii] | 0 |
| TrEMBL | A0A5J9TSN0 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH06.2661, AH09.704, BH05.2377, BH09.723, CH07.956, CH09.778 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0321360, gene-QOZ80_4BG0357080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0160850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043508 |
| Poaceae | Oryza coarctata | 1 | Oco07G003540 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g30470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G057300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303088, Pt_Chr0303106 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015350, Chr26G004500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G499700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG040240, gene_TRIDC2BG043280 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G278300.1, TraesCS2B02G295900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb420580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44969 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19519 |