Basic Information
Locus ID:
Chr26G000690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 2132255 | 2137822 | - | Chr26G000690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 368 | 2.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 80 | 0.0019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 53 | 368 | 1.67E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 199 | 382 | 9.9E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 24 | 198 | 1.1E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 330 | 369 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 285 | 327 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 266 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 170 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 41 | 80 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 125 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 337 | 368 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 337 | 368 | 9.862871 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 449 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45620.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_006651270.2 | DDB1- and CUL4-associated factor 8 [Oryza brachyantha] | 0 |
| Q8N7N5 | DDB1- and CUL4-associated factor 8 OS=Mus musculus OX=10090 GN=Dcaf8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5SNB0 | WD_REPEATS_REGION domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0003g17578 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr26G000690.