Basic Information
Locus ID:
Chr26G000200
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 520721 | 521999 | - | Chr26G000200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 36 | 169 | 3.4E-24 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 31 | 220 | 1.7E-44 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 29 | 220 | 1.1E-36 | IPR037176 |
| SMART | SM00205 | tha2 | 32 | 219 | 6.3E-17 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 178 | 3.4E-33 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 168 | 228 | 0.0081 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 30 | 219 | 17.93132 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 31 | 43 | 3.8E-9 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 88 | 117 | 3.8E-9 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 209 | 218 | 3.8E-9 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 125 | 141 | 3.8E-9 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38660.2 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_008664945.1 | osmotin-like protein [Zea mays] | 0 |
| A0A1P8B554 | Thaumatin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=TLP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811MYH8 | Osmotin-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS8436 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2288, AH06.711, BH04.2359, CH04.2700 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0693120, gene-QOZ80_9BG0718890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0358550.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065465 |
| Poaceae | Oryza coarctata | 3 | Oco21G010080, Oco22G011390, Oco22G011400 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g47670.1, LOC_Os11g47680.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G264900, gene-BS78_05G282600, gene-BS78_K334800 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G013680, Chr0G006710, Chr26G000200, Chr31G008700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G222100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4AG028160 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G174300.1.cds1, TraesCS4B02G143200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb047690_P001, Zm00001eb164710_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19156 |