Basic Information
Locus ID:
Chr26G000180
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000026 | 504822 | 506905 | + | Chr26G000180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 433 | 503 | 6.1E-11 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 87 | 250 | 1.0E-18 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 84 | 253 | 1.95E-25 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 87 | 257 | 1.5E-35 | IPR036465 |
| SMART | SM00327 | VWA_4 | 85 | 257 | 9.3E-18 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 87 | 260 | 16.821581 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 404 | - | - |
| Coils | Coil | Coil | 382 | 402 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_015618733.1 | E3 ubiquitin-protein ligase WAV3 [Oryza sativa Japonica Group] | 0 |
| P76481 | Uncharacterized protein YfbK OS=Escherichia coli (strain K12) OX=83333 GN=yfbK PE=4 SV=1 | 0 | |
| TrEMBL | A3CGW2 | Os12g0431700 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0431700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology