Basic Information
Locus ID:
Chr25G015130
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 32639079 | 32641224 | - | Chr25G015130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 276 | 339 | 3.6E-6 | IPR008906 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 44 | 341 | 1.14E-28 | IPR012337 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 557 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025877600.1 | uncharacterized protein LOC107279693 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | Q60D97 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=B1007D10.5 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_048311, gene-QYE76_055843 |
| Poaceae | Paspalum vaginatum | 15 | gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... |