Basic Information
Locus ID:
Chr25G014950
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
ATG9
Description:
Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 30993999 | 30995867 | + | Chr25G014950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 108 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025793942.1 | autophagy-related protein 9 isoform X1 [Panicum hallii] | 0 |
| Q6AVM3 | Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Oryza sativa subsp. japonica OX=39947 GN=CCAMK PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9PKD4 | Atg9 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G011190, Chr25G014950 |