Basic Information
Locus ID:
Chr25G014900
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Phosphatidylinositol-4-phosphate 5-Kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 30862380 | 30924787 | + | Chr25G014900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 333 | 583 | 4.75479E-98 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 960 | 1123 | 8.70841E-84 | IPR044769 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 407 | 580 | 3.9E-18 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 969 | 1064 | 1.8E-14 | IPR002498 |
| Pfam | PF01363 | FYVE zinc finger | 35 | 100 | 6.2E-17 | IPR000306 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 969 | 1123 | 2.94E-43 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 33 | 103 | 3.45E-19 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 412 | 549 | 3.4E-27 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 115 | 1.5E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.810.10 | - | 984 | 1124 | 7.5E-39 | - |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 407 | 549 | 7.3E-32 | IPR027409 |
| SMART | SM00330 | PIPK_2 | 704 | 1124 | 7.9E-32 | IPR002498 |
| SMART | SM00064 | fyve_4 | 30 | 103 | 1.5E-19 | IPR000306 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 814 | 1123 | 23.401686 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 38 | 102 | 13.091955 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1158 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_002444449.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Sorghum bicolor] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Z5RA00 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Sorghum bicolor OX=4558 GN=SORBI_3007G146400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology