halophFGD

Basic Information

Locus ID: Chr25G014840

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: gag-polypeptide of LTR copia-type

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000025	30542251	30542796	-	Chr25G014840

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13976	GAG-pre-integrase domain	66	131	4.3E-10	IPR025724

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_012699143.1	uncharacterized protein LOC105913792 [Setaria italica]	0
TrEMBL	A0A3L6Q9Q2	Integrase catalytic domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM15G17920 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ... Sbi_jg5628, Sbi_jg58328, Sbi_jg60530, Sbi_jg61478, Sbi_jg63342, Sbi_jg8665, Sbi_jg9642
Amaranthaceae	Salicornia europaea	3	Seu_jg13583, Seu_jg220, Seu_jg24372
Amaranthaceae	Suaeda glauca	22	Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ... Sgl28247, Sgl28348, Sgl34681, Sgl35523, Sgl40897, Sgl43954, Sgl43993, Sgl48719, Sgl48762, Sgl51791, Sgl52022, Sgl53267, Sgl54094, Sgl55419, Sgl57325, Sgl58530
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000004351, gene:ENSEOMG00000049261
Anacardiaceae	Pistacia vera	1	pistato.v30096180
Asteraceae	Flaveria trinervia	1	Ftri3G03871
Brassicaceae	Schrenkiella parvula	1	Sp7g03155.v2.2
Brassicaceae	Brassica nigra	13	BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ... BniB02g033300.2N, BniB04g047250.2N, BniB04g052240.2N, BniB05g063000.2N, BniB06g045160.2N, BniB07g001750.2N, BniB07g029480.2N, BniB07g034250.2N, BniB07g043950.2N, BniB08g017720.2N
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g15590, gene.Thate06g10480
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7277
Plantaginaceae	Plantago ovata	7	Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ... Pov_00031130, Pov_00035796, Pov_00041323
Plumbaginaceae	Limonium bicolor	2	Lb1G00201, Lb1G06209
Poaceae	Echinochloa crus-galli	3	CH01.4204, CH02.4285, CH02.754
Poaceae	Lolium multiflorum	23	gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ... gene-QYE76_009560, gene-QYE76_012081, gene-QYE76_012926, gene-QYE76_013696, gene-QYE76_016216, gene-QYE76_022787, gene-QYE76_024878, gene-QYE76_025602, gene-QYE76_025751, gene-QYE76_034510, gene-QYE76_038282, gene-QYE76_053921, gene-QYE76_054335, gene-QYE76_055424, gene-QYE76_057980, gene-QYE76_059298, gene-QYE76_062503, gene-QYE76_064015, gene-QYE76_066038, gene-QYE76_071481
Poaceae	Oryza coarctata	7	Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ... Oco09G006540, Oco16G006370, Oco22G008980
Poaceae	Sporobolus alterniflorus	24	Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ... Chr07G010460, Chr07G013140, Chr08G012100, Chr08G012270, Chr09G005120, Chr12G015710, Chr13G016330, Chr15G017680, Chr16G013230, Chr17G009520, Chr17G009530, Chr18G003390, Chr21G013910, Chr24G013840, Chr25G010030, Chr25G010040, Chr25G014830, Chr25G014840, Chr29G009710, Chr30G014440
Poaceae	Zoysia japonica	7	nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ... nbis-gene-5120, nbis-gene-56072, nbis-gene-58384, nbis-gene-58844
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g29300
Solanaceae	Solanum pennellii	1	gene-LOC114075978
Tamaricaceae	Reaumuria soongarica	3	MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045