Basic Information
Locus ID:
Chr25G014430
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 26827764 | 26834713 | - | Chr25G014430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 647 | 689 | 1.13426E-18 | - |
| Pfam | PF13639 | Ring finger domain | 648 | 689 | 1.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 637 | 691 | 8.43E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 612 | 693 | 1.8E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 648 | 688 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 648 | 689 | 12.017182 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 347 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004975145.1 | probable E3 ubiquitin-protein ligase HIP1 [Setaria italica] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9T7L7 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_47413 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH09.294, BH09.389, CH09.407 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0354160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0098410.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037823 |
| Poaceae | Oryza coarctata | 2 | Oco07G001300, Oco08G001630 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g10680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G036200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306075 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G017480, Chr25G014430, Chr26G002490, Chr30G014420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G067500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG002250, gene_TRIDC2BG002330 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G022100.1, TraesCS2B02G030700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb087670_P002, Zm00001eb419620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32173 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20972 |