Basic Information
Locus ID:
Chr25G014140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 24870739 | 24895662 | + | Chr25G014140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1454 | 1873 | 1.59641E-117 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1502 | 1878 | 2.8E-80 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 184 | 646 | 2.88E-42 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1446 | 1871 | 5.23E-95 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 173 | 491 | 1.8E-52 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1751 | 1876 | 5.5E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1397 | 1642 | 9.2E-42 | - |
| SMART | SM00119 | hect_3 | 1468 | 1878 | 1.4E-84 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1478 | 1878 | 58.443447 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 681 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1023 | 1066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 695 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_002447553.2 | E3 ubiquitin-protein ligase UPL3 [Sorghum bicolor] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TPJ3 | HECT-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_40379 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology