Basic Information
Locus ID:
Chr25G014110
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 23813608 | 23817633 | + | Chr25G014110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 228 | 270 | 2.30835E-19 | - |
| CDD | cd02123 | PA_C_RZF_like | 5 | 152 | 1.91702E-45 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 227 | 270 | 1.7E-10 | IPR001841 |
| Pfam | PF02225 | PA domain | 73 | 139 | 1.2E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 274 | 4.42E-16 | - |
| SUPERFAMILY | SSF52025 | PA domain | 78 | 146 | 1.96E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 275 | 3.9E-16 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 20 | 159 | 2.5E-26 | - |
| SMART | SM00184 | ring_2 | 228 | 269 | 8.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 270 | 12.076194 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_004975098.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Setaria italica] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TPM1 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_40383 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology