Basic Information
Locus ID:
Chr25G013180
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 17343686 | 17344705 | + | Chr25G013180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18280 | BTB_POZ_BPM_plant | 150 | 270 | 1.85858E-45 | - |
| CDD | cd00121 | MATH | 23 | 128 | 1.13157E-11 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 153 | 272 | 3.2E-24 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 141 | 273 | 1.92E-29 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 32 | 130 | 1.8E-12 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 273 | 337 | 3.9E-18 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 7 | 130 | 2.0E-11 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 137 | 268 | 7.9E-35 | IPR011333 |
| SMART | SM00225 | BTB_4 | 163 | 273 | 2.0E-22 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 161 | 234 | 17.437971 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_004979707.1 | BTB/POZ and MATH domain-containing protein 1 [Setaria italica] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9P952 | BTB domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0321680, gene-QOZ80_4AG0321870 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G227200, gene-BS78_05G092100 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G013180 |
| Poaceae | Zea mays | 1 | Zm00001eb166870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7962 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21111 |