Basic Information
Locus ID:
Chr25G013020
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Glycosyl hydrolases family 18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 16514517 | 16516018 | + | Chr25G013020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 37 | 376 | 6.3E-47 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 35 | 380 | 8.88E-48 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 273 | 347 | 2.62E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 53 | 376 | 1.3E-65 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 272 | 347 | 1.3E-65 | IPR029070 |
| SMART | SM00636 | 2g34 | 34 | 376 | 1.8E-55 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 34 | 393 | 45.954376 | IPR001223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 429 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025825878.1 | class V chitinase-like [Panicum hallii] | 0 |
| A0A072UR65 | Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TR83 | GH18 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology