Basic Information
Locus ID:
Chr25G012750
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 15416739 | 15418379 | + | Chr25G012750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 295 | 335 | 2.0E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 80 | 1.72E-5 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 295 | 340 | 4.01E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 94 | 211 | 1.44E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 42 | 232 | 3.7E-15 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 279 | 340 | 3.5E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 293 | 335 | 10.95451 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_048557048.1 | F-box protein At5g50450-like [Triticum urartu] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6Q420 | MYND-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM15G05930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology