Basic Information
Locus ID:
Chr25G011140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Dip2/Utp12 Family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 11541401 | 11549430 | - | Chr25G011140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 5 | 42 | 1.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 73 | 1.33E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 95 | 2.0E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 3 | 42 | 4.5E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 10 | 43 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 10 | 43 | 14.017362 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 29 | 43 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15440.2 | periodic tryptophan protein 2. | 0 |
| RefSeq | XP_025825644.1 | protein EI24 homolog isoform X2 [Panicum hallii] | 0 |
| Q8VYZ5 | Periodic tryptophan protein 2 OS=Arabidopsis thaliana OX=3702 GN=PWP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7PG12 | Protein EI24 homolog OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17563 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006746 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g143680 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2520, Sbi_jg59676 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24206 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00023200, GOSA_00023201 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl44277, Sgl49041 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000344, gene:ENSEOMG00000000879 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012170, CQ.Regalona.r1.6BG0012070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30111700 |
| Apiaceae | Apium graveolens | 1 | Ag1G00691 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G010950 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701305, gene-LOC103703261 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.3224.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G08178 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G06676.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028801m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g10710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g056010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0425 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0463 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g01640 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0110s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21000 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5619 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.805 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039950 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26789 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1031, BH09.1108, CH09.1243 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0317250, gene-QOZ80_4BG0348550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044080 |
| Poaceae | Oryza coarctata | 2 | Oco07G006140, Oco08G006080 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g35380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G099700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302636, Pt_Chr0302668 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr25G011130, Chr25G011140, Chr26G006670, Chr30G010730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G537500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG044220, gene_TRIDC2BG046920 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G304600.1, TraesCS2B02G321300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb082660_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37833 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19714 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1283, evm.TU.LG14.590 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g19570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.611, evm.TU.Scaffold_2_RagTag.1451 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3742 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7322 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12246 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.69 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008538 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1011 |
| Salicaceae | Populus euphratica | 1 | populus_peu08271 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623739 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031863 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13782 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3681 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23410.v3.1 |