Basic Information
Locus ID:
Chr25G011050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 11424838 | 11425311 | + | Chr25G011050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 7 | 68 | 4.1E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 8 | 71 | 6.67E-10 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 73 | 148 | 4.8E-12 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 72 | 4.8E-12 | IPR011333 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_039771879.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum virgatum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0QF40 | BTB/POZ domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG109800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0065820 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0033120.1.CDS1 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G011050 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG001230, gene_TRIDC3BG004090 |
| Poaceae | Triticum aestivum | 4 | TraesCS1D02G293800.1.cds1, TraesCS3A02G020100.1.cds1 ... |