Basic Information
Locus ID:
Chr25G010150
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc-finger of acetyl-transferase ESCO
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 10170866 | 10172740 | - | Chr25G010150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13880 | ESCO1/2 acetyl-transferase | 248 | 316 | 8.0E-24 | IPR028009 |
| Pfam | PF13878 | zinc-finger of acetyl-transferase ESCO | 56 | 94 | 1.0E-15 | IPR028005 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31400.1 | damaged DNA binding;DNA-directed DNA polymerases. Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development. | 0 |
| RefSeq | XP_004976109.1 | protein CHROMOSOME TRANSMISSION FIDELITY 7 isoform X1 [Setaria italica] | 0 |
| A7UL74 | Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Arabidopsis thaliana OX=3702 GN=CTF7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TW16 | N-acetyltransferase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_38885 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3663 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2301 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003180, Ah003185, Ah021316, Ah029263 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23823, Sbi_jg7652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12369 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009236, GOSA_00018915 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl31676, Sgl34133, Sgl34366, Sgl36981, Sgl39768, Sgl51173 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000020256, gene:ENSEOMG00000024375 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0010840, CQ.Regalona.r1.5BG0011410 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30276700 |
| Apiaceae | Apium graveolens | 1 | Ag9G01593 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G001210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714315, gene-LOC113461139 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.736.V1.1, AsparagusV1_04.737.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G17439 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027115m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g085300.2N, BniB03g010480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0778 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0889 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g01780, gene.Cymno15g03630, gene.Cymno15g03640 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0066s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g37170, gene.Thate02g37180 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1637, evm.TU.LG01.603 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003690 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G07830, Lb1G07833, Lb1G07834, Lb1G07846, Lb1G07848 |
| Poaceae | Echinochloa crus-galli | 2 | BH09.1641, CH09.1777 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0225410, gene-QOZ80_3BG0271080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178750.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044876 |
| Poaceae | Oryza coarctata | 2 | Oco07G009790, Oco08G009570 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g42120.1, LOC_Os05g31230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G149400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0302232, Pt_Chr0302269, Pt_Chr0701199 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr25G010150, Chr26G010170, Chr30G009920 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G620300, Tel2E01G620400, Tel3E01G116700 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051500, gene_TRIDC2BG054640 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G355100.1, TraesCS2B02G373200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb078390_P001, Zm00001eb078400_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36993 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19991 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1622, evm.TU.LG11.980 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03400 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_13_RagTag.348, evm.TU.Scaffold_1_RagTag.1342 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4137, nbisL1-mrna-6257 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17030, nbisL1-mrna-18096 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10153, nbisL1-mrna-10154, nbisL1-mrna-22923 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.403 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016552 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12523, nbisL1-mrna-7576 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13516, nbisL1-mrna-5697 |
| Salicaceae | Populus euphratica | 3 | populus_peu25938, populus_peu25939, populus_peu25950 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599228 |
| Solanaceae | Solanum chilense | 1 | SOLCI002682200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013038, gene-LOC107015578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9912 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0822 |
| Zosteraceae | Zostera marina | 2 | Zosma05g03870.v3.1, Zosma06g23760.v3.1 |