halophFGD

Basic Information

Locus ID: Chr25G007840

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000025	7646057	7646891	+	Chr25G007840

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	17	71	1.21E-5	IPR011011
MobiDBLite	mobidb-lite	consensus disorder prediction	77	116	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	92	110	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_015634575.1	uncharacterized protein LOC4335993 [Oryza sativa Japonica Group]	0
TrEMBL	Q0JCT8	OSJNBa0086B14.1 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0450000 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11019, jg1792, jg1793, jg29205, jg29705
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1316, gene_1473
Amaranthaceae	Atriplex hortensis	2	Ah023262, Ah023748
Amaranthaceae	Beta vulgaris	1	BVRB_1g008150
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg29222, Sbi_jg3459, Sbi_jg4151, Sbi_jg49656
Amaranthaceae	Salicornia europaea	2	Seu_jg5604, Seu_jg6505
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000212, GOSA_00001008
Amaranthaceae	Suaeda glauca	3	Sgl10547, Sgl11356, Sgl16741
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013018, gene:ENSEOMG00000014117 ... gene:ENSEOMG00000034726, gene:ENSEOMG00000035407, gene:ENSEOMG00000046445, gene:ENSEOMG00000048540
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0007050, CQ.Regalona.r1.1AG0010950 ... CQ.Regalona.r1.1BG0014920, CQ.Regalona.r1.2BG0022750
Anacardiaceae	Pistacia vera	2	pistato.v30002300, pistato.v30041640
Apiaceae	Apium graveolens	2	Ag1G00103, Ag5G01159
Arecaceae	Cocos nucifera	6	COCNU_03G007340, COCNU_06G018220, COCNU_07G005590 ... COCNU_07G005600, COCNU_10G003820, COCNU_13G003700
Arecaceae	Phoenix dactylifera	3	gene-LOC103711006, gene-LOC103716548, gene-LOC103723726
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3571.V1.1, AsparagusV1_08.2361.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G24730, Ftri3G28602, Ftri5G26837, Ftri7G29390 ... Ftri9G26886
Brassicaceae	Arabidopsis thaliana	2	AT1G02070.1, AT3G60520.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006310m.g.v1.0, Thhalv10009084m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g00230.v2.2, Sp2g24365.v2.2, Sp5g02700.v2.2
Brassicaceae	Brassica nigra	3	BniB02g000880.2N, BniB06g053570.2N, BniB08g074900.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1230, Ceq05G1108
Casuarinaceae	Casuarina glauca	1	Cgl03G1335
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g08340, gene.Cymno03g07020
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g04800, gene.Thate05g27060, gene.Thate09g03130
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2081, nbisL1-mrna-6086
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.126, evm.TU.LG06.1559
Plumbaginaceae	Limonium bicolor	3	Lb5G28843, Lb6G30192, Lb6G31412
Poaceae	Echinochloa crus-galli	16	AH01.4721, AH07.2287, AH07.2874, AH09.1171, AH09.1836 ... BH07.2692, BH07.3933, BH07.3936, BH09.1272, BH09.2009, CH01.5297, CH07.2176, CH07.2763, CH09.1383, CH09.2159, Contig181.144
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0134780, gene-QOZ80_2AG0139790 ... gene-QOZ80_2BG0190270, gene-QOZ80_2BG0195450, gene-QOZ80_3AG0236570, gene-QOZ80_3BG0291470, gene-QOZ80_4AG0308230, gene-QOZ80_4AG0315770, gene-QOZ80_4BG0339240, gene-QOZ80_4BG0346760
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0172080.1, HORVU.MOREX.r3.2HG0189600.1 ... HORVU.MOREX.r3.6HG0600930.1
Poaceae	Lolium multiflorum	1	gene-QYE76_018209
Poaceae	Oryza coarctata	9	Oco03G017220, Oco04G013180, Oco04G017970, Oco05G004890 ... Oco06G005010, Oco07G007150, Oco07G012430, Oco08G007060, Oco08G012160
Poaceae	Oryza sativa	5	LOC_Os02g36000.1, LOC_Os02g44090.1, LOC_Os03g08840.1 ... LOC_Os04g37700.1, LOC_Os04g46600.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G455400, gene-BS78_04G170400 ... gene-BS78_04G218800, gene-BS78_06G114800, gene-BS78_06G181500
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0101404, Pt_Chr0107709, Pt_Chr0301769, Pt_Chr0301780 ... Pt_Chr0302557, Pt_Chr0504742
Poaceae	Sporobolus alterniflorus	14	Chr04G002490, Chr06G005830, Chr07G008750, Chr09G013710 ... Chr09G024290, Chr12G013570, Chr13G009560, Chr15G007450, Chr23G011870, Chr25G005890, Chr25G007840, Chr26G007650, Chr30G005710, Chr30G007740
Poaceae	Thinopyrum elongatum	4	Tel2E01G558700, Tel2E01G705500, Tel4E01G505200 ... Tel6E01G468100
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG046170, gene_TRIDC2AG059720 ... gene_TRIDC2BG049120, gene_TRIDC4AG000180, gene_TRIDC4BG051640, gene_TRIDC6AG038530, gene_TRIDC6BG045430
Poaceae	Triticum aestivum	12	TraesCS2A02G317800.1, TraesCS2A02G413800.1 ... TraesCS2B02G335800.1, TraesCS2B02G432600.1, TraesCS2D02G315500.1, TraesCS2D02G410800.1, TraesCS4A02G001900.1, TraesCS4B02G303200.1, TraesCS4D02G301700.1, TraesCS6A02G250100.1, TraesCS6B02G275300.1, TraesCS6D02G231900.1
Poaceae	Zea mays	10	Zm00001eb006590_P001, Zm00001eb074720_P001 ... Zm00001eb081390_P001, Zm00001eb186590_P001, Zm00001eb244610_P001, Zm00001eb244620_P001, Zm00001eb249520_P001, Zm00001eb401520_P001, Zm00001eb423710_P001, Zm00001eb429690_P001
Poaceae	Zoysia japonica	7	nbis-gene-22366, nbis-gene-37281, nbis-gene-37717 ... nbis-gene-4267, nbis-gene-58667, nbis-gene-7539, nbis-gene-9264
Poaceae	Zoysia macrostachya	7	Zma_g13736, Zma_g14051, Zma_g16813, Zma_g19795, Zma_g20192 ... Zma_g21367, Zma_g4270
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1870, evm.TU.LG06.486, evm.TU.LG19.735 ... evm.TU.LG24.725
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g19030, gene.Posoc04g17510, gene.Posoc07g04560
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_7_RagTag.214, evm.TU.Scaffold_7_RagTag.940 ... evm.TU.Scaffold_8_RagTag.802
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-18950, nbisL1-mrna-19504, nbisL1-mrna-8323 ... nbisL1-mrna-8401, nbisL1-mrna-9438
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12704, nbisL1-mrna-13797
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15160, nbisL1-mrna-6773, nbisL1-mrna-7075
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.720, evm.TU.utg000018l.112 ... evm.TU.utg000018l.484, evm.TU.utg000028l.123
Rhizophoraceae	Kandelia obovata	3	Maker00002777, Maker00002791, Maker00010565
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11513, nbisL1-mrna-13044, nbisL1-mrna-20499 ... nbisL1-mrna-8085
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10185, nbisL1-mrna-22757, nbisL1-mrna-9767
Salicaceae	Populus euphratica	3	populus_peu12025, populus_peu18066, populus_peu31831
Solanaceae	Lycium barbarum	4	gene-LOC132602509, gene-LOC132627599, gene-LOC132634783 ... gene-LOC132645758
Solanaceae	Solanum chilense	3	SOLCI001541700, SOLCI002945500, SOLCI004763700
Solanaceae	Solanum pennellii	3	gene-LOC107001836, gene-LOC107015013, gene-LOC107015982
Tamaricaceae	Reaumuria soongarica	2	STRG.8395_chr06_+, gene_1531
Tamaricaceae	Tamarix chinensis	2	TC03G2599, TC09G2535
Zosteraceae	Zostera marina	4	Zosma01g07290.v3.1, Zosma02g05750.v3.1, Zosma06g03820.v3.1 ... Zosma06g19980.v3.1