halophFGD

Basic Information

Locus ID: Chr25G006440

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Heat shock chaperonin-binding motif.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000025	6034596	6037516	-	Chr25G006440

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13414	TPR repeat	389	430	1.2E-8	-
Pfam	PF13181	Tetratricopeptide repeat	451	483	0.014	IPR019734
Pfam	PF00515	Tetratricopeptide repeat	71	103	2.3E-7	IPR001440
Pfam	PF13432	Tetratricopeptide repeat	7	67	0.0013	-
Pfam	PF17830	STI1 domain	136	189	2.3E-20	IPR041243
Pfam	PF17830	STI1 domain	512	563	2.7E-14	IPR041243
Pfam	PF13181	Tetratricopeptide repeat	250	275	0.14	IPR019734
Pfam	PF13181	Tetratricopeptide repeat	327	350	0.21	IPR019734
SUPERFAMILY	SSF48452	TPR-like	381	494	1.79E-42	IPR011990
SUPERFAMILY	SSF48452	TPR-like	242	370	4.17E-41	IPR011990
SUPERFAMILY	SSF48452	TPR-like	2	114	5.7E-39	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	380	495	5.5E-37	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	240	374	5.6E-39	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	1	115	1.6E-37	IPR011990
Gene3D	G3DSA:1.10.260.100	-	503	571	2.6E-24	-
Gene3D	G3DSA:1.10.260.100	-	126	192	2.5E-21	-
SMART	SM00028	tpr_5	243	276	0.036	IPR019734
SMART	SM00028	tpr_5	70	103	1.4E-6	IPR019734
SMART	SM00028	tpr_5	450	483	2.6E-5	IPR019734
SMART	SM00727	CBM	145	184	3.9E-5	IPR006636
SMART	SM00028	tpr_5	2	35	0.0051	IPR019734
SMART	SM00727	CBM	520	559	2.5E-5	IPR006636
SMART	SM00028	tpr_5	382	415	0.0026	IPR019734
SMART	SM00028	tpr_5	277	310	0.0052	IPR019734
SMART	SM00028	tpr_5	416	449	3.5E-4	IPR019734
SMART	SM00028	tpr_5	318	355	28.0	IPR019734
SMART	SM00028	tpr_5	36	69	11.0	IPR019734
ProSiteProfiles	PS50005	TPR repeat profile.	70	103	12.1249	IPR019734
ProSiteProfiles	PS50005	TPR repeat profile.	450	483	10.6499	IPR019734
ProSiteProfiles	PS50005	TPR repeat profile.	382	415	8.9684	IPR019734
ProSiteProfiles	PS50005	TPR repeat profile.	243	276	9.7649	IPR019734
ProSiteProfiles	PS50005	TPR repeat profile.	2	35	10.2369	IPR019734
ProSiteProfiles	PS50005	TPR repeat profile.	416	449	8.2899	IPR019734
ProSiteProfiles	PS50293	TPR repeat region circular profile.	70	103	9.092143	-
MobiDBLite	mobidb-lite	consensus disorder prediction	216	247	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	106	130	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	198	247	-	-
Coils	Coil	Coil	354	374	-	-
Coils	Coil	Coil	227	247	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K09553 (stress-induced-phosphoprotein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62740.1	stress-inducible protein, putative.
RefSeq	XP_039822106.1	hsp70-Hsp90 organizing protein-like [Panicum virgatum]
Swiss-Prot	F8RP11	Hsp70-Hsp90 organizing protein OS=Triticum aestivum OX=4565 GN=HOP PE=1 SV=1
TrEMBL	A0A5J9TUL1	TPR_REGION domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_38558 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg23371, jg37233
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1932
Amaranthaceae	Atriplex hortensis	1	Ah004749
Amaranthaceae	Beta vulgaris	2	BVRB_5g098030, BVRB_6g145050
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24337, Sbi_jg8171
Amaranthaceae	Salicornia europaea	1	Seu_jg11847
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00001516
Amaranthaceae	Suaeda glauca	1	Sgl56891
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000008001, gene:ENSEOMG00000020965 ... gene:ENSEOMG00000024273
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0000580, CQ.Regalona.r1.5BG0000590
Anacardiaceae	Pistacia vera	1	pistato.v30142990
Apiaceae	Apium graveolens	3	Ag6G00625, Ag6G01745, Ag6G02616
Arecaceae	Cocos nucifera	2	COCNU_10G004330, scaffold005462G000020
Arecaceae	Phoenix dactylifera	1	gene-LOC103708511
Asparagaceae	Asparagus officinalis	1	AsparagusV1_10.277.V1.1
Asteraceae	Flaveria trinervia	2	Ftri14G30651, Ftri16G04267
Brassicaceae	Arabidopsis thaliana	3	AT1G12270.1, AT1G62740.1, AT4G12400.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10007205m.g.v1.0, Thhalv10023385m.g.v1.0 ... Thhalv10028542m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g10890.v2.2, Sp2g01900.v2.2, Sp6g05150.v2.2
Brassicaceae	Brassica nigra	6	BniB02g007040.2N, BniB02g007050.2N, BniB02g010350.2N ... BniB02g058810.2N, BniB04g021610.2N, BniB05g056300.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G0077
Casuarinaceae	Casuarina glauca	1	Cgl03G0083
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g08510, gene.Cymno03g07710
Dunaliellaceae	Dunaliella salina	1	Dusal.0549s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate08g06620
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1304, evm.TU.LG10.1243
Plantaginaceae	Plantago ovata	1	Pov_00004214
Plumbaginaceae	Limonium bicolor	2	Lb2G08978, Lb8G36485
Poaceae	Echinochloa crus-galli	6	AH07.2799, AH09.1730, BH07.2609, BH09.1910, CH07.2674 ... CH09.2063
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0139090, gene-QOZ80_2BG0194740 ... gene-QOZ80_4AG0309120, gene-QOZ80_4BG0340140
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0184620.1, HORVU.MOREX.r3.6HG0599080.1
Poaceae	Lolium multiflorum	2	gene-QYE76_024019, gene-QYE76_045246
Poaceae	Oryza coarctata	4	Oco03G016570, Oco04G017340, Oco07G011740, Oco08G011420
Poaceae	Oryza sativa	2	LOC_Os02g43020.1, LOC_Os04g45480.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G211500, gene-BS78_06G172500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0201606, Pt_Chr0204042, Pt_Chr0207518, Pt_Chr0301875
Poaceae	Sporobolus alterniflorus	6	Chr06G006380, Chr09G024750, Chr13G006270, Chr15G008090 ... Chr25G006440, Chr30G006270
Poaceae	Thinopyrum elongatum	2	Tel2E01G663300, Tel6E01G452300
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG055670, gene_TRIDC2BG058540 ... gene_TRIDC5AG033520, gene_TRIDC6AG036790, gene_TRIDC6BG043580
Poaceae	Triticum aestivum	7	TraesCS2A02G386800.1, TraesCS2B02G404400.1 ... TraesCS2D02G117300.1, TraesCS2D02G383600.1, TraesCS6A02G238600.1, TraesCS6B02G285800.1, TraesCS6D02G221000.1
Poaceae	Zea mays	3	Zm00001eb075450_P002, Zm00001eb186100_P001 ... Zm00001eb248730_P001
Poaceae	Zoysia japonica	3	nbis-gene-22451, nbis-gene-37197, nbis-gene-9339
Poaceae	Zoysia macrostachya	3	Zma_g13997, Zma_g16761, Zma_g20136
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.441, evm.TU.LG10.189, evm.TU.LG17.185 ... evm.TU.LG22.1456
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g19450
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_14_RagTag.312, evm.TU.Scaffold_16_RagTag.294
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-18065, nbisL1-mrna-22535, nbisL1-mrna-31001
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-5215, nbisL1-mrna-7515
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20233, nbisL1-mrna-8407
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000007l.181, evm.TU.utg000022l.317
Rhizophoraceae	Kandelia obovata	2	Maker00014231, Maker00018599
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-16124, nbisL1-mrna-3456
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10778, nbisL1-mrna-6583
Salicaceae	Populus euphratica	3	populus_peu03416, populus_peu03417, populus_peu34256
Solanaceae	Lycium barbarum	2	gene-LOC132609834, gene-LOC132635070
Solanaceae	Solanum chilense	1	SOLCI005886600
Solanaceae	Solanum pennellii	1	gene-LOC107028487
Tamaricaceae	Reaumuria soongarica	1	STRG.13614_chr05_+
Tamaricaceae	Tamarix chinensis	1	TC02G0115
Zosteraceae	Zostera marina	1	Zosma01g13100.v3.1