Basic Information
Locus ID:
Chr25G003900
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 3278866 | 3280152 | + | Chr25G003900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 39 | 7.1E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 57 | 6.28E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 44 | 2.8E-8 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 1.4E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 49 | 9.285514 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024313675.1 | uncharacterized protein LOC106865926 [Brachypodium distachyon] | 0 |
| TrEMBL | M8C4W8 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.909, CH01.1086 |
| Poaceae | Oryza coarctata | 1 | Oco05G021200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49690.1 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr0G019060, Chr0G019110, Chr0G019180, Chr0G020660 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G278500 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G119500.1, TraesCS6B02G147800.1.cds1 |