Basic Information
Locus ID:
Chr25G001730
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 1377100 | 1383515 | - | Chr25G001730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 102 | 257 | 1.5E-17 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 293 | 431 | 8.9E-21 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 279 | 434 | 3.9E-19 | IPR044880 |
| Gene3D | G3DSA:1.20.1420.30 | - | 131 | 269 | 7.0E-13 | IPR044880 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 71 | 434 | 9.1E-117 | - |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 83 | 434 | 6.3E-104 | IPR004798 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13320.1 | cation exchanger 2. low affinity calcium antiporter CAX2 | 0 |
| RefSeq | XP_004960250.1 | vacuolar cation/proton exchanger 3 isoform X1 [Setaria italica] | 0 |
| Q6K1C4 | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TYD9 | Vacuolar cation/proton exchanger OS=Eragrostis curvula OX=38414 GN=EJB05_39958 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology