Basic Information
Locus ID:
Chr25G001520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 1193110 | 1194744 | + | Chr25G001520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 27 | 140 | 3.95214E-13 | IPR002083 |
| CDD | cd00121 | MATH | 202 | 325 | 6.93502E-15 | IPR002083 |
| Pfam | PF00917 | MATH domain | 34 | 140 | 0.0019 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 359 | 467 | 2.7E-17 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 198 | 295 | 3.92E-15 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 20 | 143 | 1.8E-16 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 354 | 468 | 2.2E-18 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 18 | 143 | 2.6E-15 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 354 | 471 | 1.0E-20 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 200 | 323 | 1.4E-11 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 472 | 533 | 1.9E-9 | - |
| SMART | SM00225 | BTB_4 | 365 | 470 | 1.7E-15 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 365 | 430 | 12.76384 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 13 | 139 | 10.572254 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034585246.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria viridis] | 0 |
| Q0VCW1 | Speckle-type POZ protein OS=Bos taurus OX=9913 GN=SPOP PE=2 SV=1 | 0 | |
| TrEMBL | K3ZEL5 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=101785763 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300850, gene-QOZ80_4BG0331560 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001920, Chr25G001520, Chr30G001520 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23089 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20606 |