Basic Information
Locus ID:
Chr25G000650
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 589874 | 599346 | + | Chr25G000650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 265 | 1.23758E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 11 | 46 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 137 | 173 | 1.2E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 131 | 3.2E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 752 | 908 | 4.4E-48 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 9.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 54 | 89 | 1.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 298 | 3.05E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 182 | 1.0E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 132 | 4.5E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 183 | 303 | 1.5E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 176 | 215 | 4.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 47 | 0.0053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 131 | 6.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 256 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 173 | 3.4E-13 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 141 | 182 | 18.729328 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 99 | 133 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 14 | 56 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 98 | 16.189545 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 57 | 91 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 140 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 141 | 178 | 14.476484 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 183 | 218 | 12.499222 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 224 | 15.72169 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 76 | 90 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 202 | 216 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 160 | 174 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 1.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 160 | 174 | 1.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 118 | 132 | 1.2E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 3 | 913 | 20.767103 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 671 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039774457.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3-like [Panicum virgatum] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U0U6 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Eragrostis curvula OX=38414 GN=EJB05_40174 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology