Basic Information
Locus ID:
Chr25G000630
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000025 | 572802 | 576860 | - | Chr25G000630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 449 | 9.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 327 | 6.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 454 | 491 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 588 | 625 | 0.024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 289 | 629 | 1.24E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 237 | 370 | 1.2E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 395 | 664 | 4.7E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 585 | 626 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 734 | 778 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 532 | 55.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 584 | 67.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 5.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 491 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 449 | 1.8E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 493 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 458 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 333 | 11.471045 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 418 | 450 | 10.943775 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 337 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 458 | 493 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 315 | 329 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 436 | 450 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 478 | 492 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 436 | 450 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 315 | 329 | 1.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 274 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004960064.1 | WD repeat-containing protein 44 [Setaria italica] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TYX5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_40185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology