Basic Information
Locus ID:
Chr24G012260
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000024 | 36907240 | 36923790 | - | Chr24G012260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 151 | 1.68669E-56 | - |
| Pfam | PF16124 | RecQ zinc-binding | 265 | 321 | 6.3E-6 | IPR032284 |
| Pfam | PF09382 | RQC domain | 317 | 412 | 2.8E-20 | IPR018982 |
| Pfam | PF14493 | Helix-turn-helix domain | 571 | 645 | 2.7E-6 | IPR029491 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 181 | 252 | 6.5E-16 | IPR001650 |
| SUPERFAMILY | SSF47819 | HRDC-like | 481 | 533 | 1.4E-5 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 322 | 410 | 1.36E-20 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 49 | 267 | 2.32E-38 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 312 | 435 | 1.4E-31 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 162 | 284 | 1.1E-29 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 46 | 160 | 1.0E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 45 | 1.4E-11 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 472 | 541 | 5.3E-5 | IPR044876 |
| SMART | SM00490 | helicmild6 | 172 | 253 | 4.0E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 167 | 2.1E-5 | IPR014001 |
| SMART | SM00956 | RQC_2 | 315 | 419 | 1.5E-13 | IPR018982 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 53 | 161 | 12.634224 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 126 | 307 | 15.986269 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_034581483.1 | probable ATP-dependent DNA helicase RecQ [Setaria viridis] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9SQD2 | ATP-dependent DNA helicase OS=Eragrostis curvula OX=38414 GN=EJB05_53381 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology