Basic Information
Locus ID:
Chr24G011120
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000024 | 35057057 | 35058556 | - | Chr24G011120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 77 | 350 | 1.54698E-77 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 79 | 322 | 9.3E-55 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 53 | 335 | 2.88E-87 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 48 | 352 | 2.2E-110 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 270 | 282 | - | IPR033749 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 129 | 145 | - | IPR033749 |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 55 | 350 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 55 | 350 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_047068862.1 | geranylgeranyl pyrophosphate synthase, chloroplastic-like [Lolium rigidum] | 0 |
| P34802 | Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0A9DK61 | Geranylgeranyl pyrophosphate synthase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology