HalophFGD

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Basic Information
Locus ID: Chr24G009810
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000024 33089868 33097842 + Chr24G009810
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 19 59 4.2E-6 IPR001810
SUPERFAMILY SSF81383 F-box domain 13 75 4.06E-10 IPR036047
Gene3D G3DSA:1.20.1280.50 - 19 58 7.6E-6 -
SMART SM00256 fbox_2 21 62 0.0028 IPR001810
ProSiteProfiles PS50181 F-box domain profile. 15 62 8.914593 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_044417006.1 uncharacterized protein LOC123142042 [Triticum aestivum] 0
TrEMBL A0A835E815 F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_051557 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 15 AH03.3307, AH03.3328, AH03.3352, AH05.4107, BH03.3220 ...
BH03.3478, BH03.3490, BH03.3511, BH05.4116, BH05.4121, BH05.4122, CH03.3721, CH05.4339, CH05.4340, CH05.4346
Poaceae Eleusine coracana subsp. coracana 27 gene-QOZ80_5AG0397670, gene-QOZ80_5AG0397800 ...
gene-QOZ80_5AG0397820, gene-QOZ80_5BG0446170, gene-QOZ80_7AG0571450, gene-QOZ80_7AG0571460, gene-QOZ80_7AG0571480, gene-QOZ80_7AG0571490, gene-QOZ80_7AG0571800, gene-QOZ80_7AG0571840, gene-QOZ80_7AG0572040, gene-QOZ80_7AG0572050, gene-QOZ80_7AG0572070, gene-QOZ80_7AG0572110, gene-QOZ80_7AG0572130, gene-QOZ80_7AG0572150, gene-QOZ80_7AG0572170, gene-QOZ80_7BG0603100, gene-QOZ80_7BG0603120, gene-QOZ80_7BG0603170, gene-QOZ80_7BG0603510, gene-QOZ80_7BG0603520, gene-QOZ80_7BG0603530, gene-QOZ80_7BG0603550, gene-QOZ80_7BG0603570, gene-QOZ80_7BG0603590, gene-QOZ80_UnG0727510
Poaceae Hordeum vulgare 8 HORVU.MOREX.r3.2HG0136340.1.CDS1 ...
HORVU.MOREX.r3.7HG0644510.1.CDS1, HORVU.MOREX.r3.7HG0744300.1.CDS1, HORVU.MOREX.r3.7HG0744330.1.CDS1, HORVU.MOREX.r3.7HG0744390.1.CDS1, HORVU.MOREX.r3.7HG0744500.1.CDS1, HORVU.MOREX.r3.7HG0749430.1.CDS1, HORVU.MOREX.r3.7HG0749440.1.CDS1
Poaceae Lolium multiflorum 9 gene-QYE76_018247, gene-QYE76_019531, gene-QYE76_019533 ...
gene-QYE76_021019, gene-QYE76_036656, gene-QYE76_036658, gene-QYE76_036672, gene-QYE76_039120, gene-QYE76_040248
Poaceae Oryza coarctata 6 Oco03G009990, Oco07G002030, Oco13G009760, Oco14G010360 ...
Oco14G010370, Oco14G010390
Poaceae Oryza sativa 7 LOC_Os07g36830.1, LOC_Os07g36840.1, LOC_Os07g36870.1 ...
LOC_Os07g36880.1, LOC_Os07g36910.2, LOC_Os07g36920.1, LOC_Os10g04590.1
Poaceae Paspalum vaginatum 22 gene-BS78_02G246000, gene-BS78_02G307200, gene-BS78_K058400 ...
gene-BS78_02G308200, gene-BS78_02G310800, gene-BS78_02G310900, gene-BS78_02G311000, gene-BS78_02G311100, gene-BS78_02G311400, gene-BS78_03G374400, gene-BS78_05G063900, gene-BS78_08G142300, gene-BS78_08G143700, gene-BS78_08G144300, gene-BS78_08G144900, gene-BS78_08G145300, gene-BS78_08G145400, gene-BS78_08G145500, gene-BS78_08G145700, gene-BS78_08G145900, gene-BS78_08G146000, gene-BS78_09G059500
Poaceae Puccinellia tenuiflora 16 Pt_Chr0201154, Pt_Chr0304282, Pt_Chr0305056, Pt_Chr0401573 ...
Pt_Chr0401586, Pt_Chr0401588, Pt_Chr0401590, Pt_Chr0401591, Pt_Chr0401594, Pt_Chr0401595, Pt_Chr0402988, Pt_Chr0500826, Pt_Chr0500920, Pt_Chr0504869, Pt_Chr0504877, Pt_Chr0600564
Poaceae Sporobolus alterniflorus 12 Chr02G018260, Chr02G018840, Chr04G018950, Chr05G015670 ...
Chr13G002690, Chr24G009760, Chr24G009810, Chr27G012610, Chr27G012630, Chr28G009140, Chr28G009150, Chr28G009160
Poaceae Thinopyrum elongatum 19 Tel2E01G261800, Tel2E01G262200, Tel2E01G392900 ...
Tel2E01G826100, Tel2E01G943900, Tel2E01G944100, Tel6E01G649400, Tel7E01G1002600, Tel7E01G140400, Tel7E01G140900, Tel7E01G884000, Tel7E01G885400, Tel7E01G885600, Tel7E01G886000, Tel7E01G887600, Tel7E01G890300, Tel7E01G891700, Tel7E01G893400, Tel7E01G989200
Poaceae Triticum dicoccoides 12 gene_TRIDC1BG042210, gene_TRIDC2AG027420 ...
gene_TRIDC2AG073230, gene_TRIDC2BG031510, gene_TRIDC2BG031550, gene_TRIDC4AG062770, gene_TRIDC4AG062790, gene_TRIDC4AG062800, gene_TRIDC7AG007150, gene_TRIDC7AG072010, gene_TRIDC7AG072200, gene_TRIDC7BG067890
Poaceae Triticum aestivum 60 TraesCS1B02G258500.1.cds1, TraesCS2A02G104300.1 ...
TraesCS2A02G124500.1, TraesCS2A02G125000.1, TraesCS2A02G209300.1.cds1, TraesCS2A02G552600.1, TraesCS2A02G553200.1.cds1, TraesCS2B02G146300.1.cds1, TraesCS2B02G146400.1, TraesCS2B02G147000.1, TraesCS2B02G235300.1.cds1, TraesCS2B02G235500.1.cds1, TraesCS2B02G583400.1, TraesCS2B02G584900.1.cds1, TraesCS2D02G127300.1.cds1, TraesCS2D02G127400.1.cds1, TraesCS2D02G216100.1.cds1, TraesCS4A02G423200.1.cds1, TraesCS4A02G423300.1.cds1, TraesCS4A02G423400.1.cds1, TraesCS6A02G040900.1, TraesCS6B02G398800.1.cds1, TraesCS6D02G046800.1.cds1, TraesCS6D02G347400.1.cds1, TraesCS6D02G347700.1.cds1, TraesCS7A02G066600.1, TraesCS7A02G066700.1, TraesCS7A02G066800.1.cds1, TraesCS7A02G512500.1.cds1, TraesCS7A02G514000.1.cds1, TraesCS7A02G563900.1.cds1, TraesCS7A02G564100.1.cds1, TraesCS7B02G416900.1.cds1, TraesCS7B02G424300.1.cds1, TraesCS7B02G424800.1.cds1, TraesCS7B02G426100.1, TraesCS7B02G426500.1.cds1, TraesCS7B02G427000.1, TraesCS7B02G427600.1, TraesCS7B02G427700.1.cds1, TraesCS7B02G427900.1, TraesCS7B02G428100.1.cds1, TraesCS7B02G428400.1.cds1, TraesCS7B02G428800.1, TraesCS7B02G429000.1.cds1, TraesCS7B02G452700.1.cds1, TraesCS7B02G498700.1.cds1, TraesCS7D02G060800.1.cds1, TraesCS7D02G061000.1.cds1, TraesCS7D02G061100.1.cds1, TraesCS7D02G061200.1.cds1, TraesCS7D02G398400.1.cds1, TraesCS7D02G398500.1.cds1, TraesCS7D02G502200.1.cds1, TraesCS7D02G503200.1.cds1, TraesCS7D02G504700.1, TraesCS7D02G546800.1.cds1, TraesCS7D02G546900.1.cds1, TraesCSU02G087300.1, TraesCSU02G094400.1.cds1
Poaceae Zea mays 2 Zm00001eb323630_P001, Zm00001eb323800_P001
Poaceae Zoysia japonica 6 nbis-gene-1001, nbis-gene-10662, nbis-gene-10663 ...
nbis-gene-10694, nbis-gene-58623, nbis-gene-733
Poaceae Zoysia macrostachya 2 Zma_g5311, Zma_g5327
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.