Basic Information
Locus ID:
Chr24G009470
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000024 | 31858020 | 31860442 | - | Chr24G009470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 44 | 4.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 64 | 1.57E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 44 | 4.4E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 130 | 476 | 2.3E-6 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 39 | 9.338503 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52460.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_002462983.2 | putative F-box/FBD/LRR-repeat protein At4g03220 [Sorghum bicolor] | 0 |
| Q9FHB5 | Putative F-box/FBD/LRR-repeat protein At5g52460 OS=Arabidopsis thaliana OX=3702 GN=EDA41 PE=4 SV=2 | 0 | |
| TrEMBL | A0A4V6DBS8 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G355400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH03.3295 |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_7AG0571210, gene-QOZ80_7AG0571240 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040714, gene-QYE76_040716 |
| Poaceae | Oryza coarctata | 2 | Oco13G009510, Oco14G010080 |
| Poaceae | Oryza sativa | 4 | LOC_Os07g36280.1, LOC_Os07g36290.1, LOC_Os07g36300.1 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr19G004900, Chr24G009450, Chr24G009460, Chr24G009470 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-769 |